Jarone Pinhassi

Professor

Department of Biology and Environmental Science Faculty of Health and Life Sciences

jarone.pinhassi@lnu.se

44031, Hus Vita, Kalmar

I do research on ecology, physiology, genomics and diversity of marine bacterioplankton. The central focus of my research is on bacterioplankton community structure and function in marine pelagic systems. This includes the analyses of both the biodiversity of marine planktonic bacteria and the critical role they play in nutrient turnover and energy flow through the marine ecosystem.

I was elected member of the Royal Swedish Academy of Sciences in 2017, in the Class for Biological Sciences.

Selected publications

My research groups

My ongoing research projects

My completed research projects

Publications

Article in journal (Refereed)

Delgadillo-Nuno, E., Teira, E., Pontiller, B., Lundin, D., Joglar, V., et al. (2024). Coastal upwelling systems as dynamic mosaics of bacterioplankton functional specialization. Frontiers in Marine Science. 10.
Status: Published
Capo, E., Peterson, B.D., Kim, M., Jones, D.S., Acinas, S.G., et al. (2023). A consensus protocol for the recovery of mercury methylation genes from metagenomes. Molecular Ecology Resources. 23 (1). 190-204.
Status: Published
Verma, A., Amnebrink, D., Pinhassi, J., Wikner, J. (2023). Prokaryotic maintenance respiration and growth efficiency field patterns reproduced by temperature and nutrient control at mesocosm scale. Environmental Microbiology. 25 (3). 721-737.
Status: Published
Aguilera, A., Alegria Zufia, J., Bas Conn, L., Gurlit, L., Śliwińska‐wilczewska, S., et al. (2023). Ecophysiological analysis reveals distinct environmental preferences in closely related Baltic Sea picocyanobacteria. Environmental Microbiology. 25 (9). 1674-1695.
Status: Published
Seidel, L., Broman, E., Nilsson, E., Ståhle, M., Ketzer, J.M., et al. (2023). Climate change-related warming reduces thermal sensitivity and modifies metabolic activity of coastal benthic bacterial communities. The ISME Journal. 17. 855-869.
Status: Published
Churakova, Y., Aguilera, A., Charalampous, E., Conley, D.J., Lundin, D., et al. (2023). Biogenic silica accumulation in picoeukaryotes : Novel players in the marine silica cycle. Environmental Microbiology Reports. 15 (4). 282-290.
Status: Published
Massing, J.C., Fahimipour, A.K.K., Bunse, C., Pinhassi, J., Gross, T. (2023). Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community. mSystems. 8 (3).
Status: Published
Abreu, C.I., Dal Bello, M., Bunse, C., Pinhassi, J., Gore, J. (2023). Warmer temperatures favor slower-growing bacteria in natural marine communities. Science Advances. 9 (19).
Status: Published
Fridolfsson, E., Bunse, C., Lindehoff, E., Farnelid, H., Pontiller, B., et al. (2023). Multiyear analysis uncovers coordinated seasonality in stocks and composition of the planktonic food web in the Baltic Sea proper. Scientific Reports. 13 (1).
Status: Published
Capo, E., Broman, E., Bonaglia, S., Bravo, A.G., Bertilsson, S., et al. (2022). Oxygen-deficient water zones in the Baltic Sea promote uncharacterized Hg methylating microorganisms in underlying sediments. Limnology and Oceanography. 67 (1). 135-146.
Status: Published
Osbeck, C.M.G., Lundin, D., Karlsson, C., Teikari, J.E., Moran, M.A., et al. (2022). Divergent gene expression responses in two Baltic Sea heterotrophic model bacteria to dinoflagellate dissolved organic matter. PLOS ONE. 17 (11).
Status: Published
Pinhassi, J., Farnelid, H., Garcia, S.M., Teira, E., Galand, P.E., et al. (2022). Functional responses of key marine bacteria to environmental change - toward genetic counselling for coastal waters. Frontiers in Microbiology. 13.
Status: Published
Martínez-García, S., Bunse, C., Pontiller, B., Baltar, F., Israelsson, S., et al. (2022). Seasonal Dynamics in Carbon Cycling of Marine Bacterioplankton Are Lifestyle Dependent. Frontiers in Microbiology. 13.
Status: Published
Capo, E., Feng, C., Bravo, A.G., Bertilsson, S., Soerensen, A.L., et al. (2022). Expression Levels of hgcAB Genes and Mercury Availability Jointly Explain Methylmercury Formation in Stratified Brackish Waters. Environmental Science and Technology. 56 (18). 13119-13130.
Status: Published
Pontiller, B., Martínez-García, S., Joglar, V., Amnebrink, D., Pérez Martínez, C., et al. (2022). Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system. The ISME Journal. 16. 2360-2372.
Status: Published
Westmeijer, G., Mehrshad, M., Turner, S., Alakangas, L., Sachpazidou, V., et al. (2022). Connectivity of Fennoscandian Shield terrestrial deep biosphere microbiomes with surface communities. Communications Biology. 5 (1).
Status: Published
Laber, C.P., Pontiller, B., Bunse, C., Osbeck, C.M.G., Pérez Martínez, C., et al. (2022). Seasonal and Spatial Variations in Synechococcus Abundance and Diversity Throughout the Gullmar Fjord, Swedish Skagerrak. Frontiers in Microbiology. 13.
Status: Published
Joglar, V., Pontiller, B., Martinez-Garcia, S., Fuentes-Lema, A., Perez-Lorenzo, M., et al. (2021). Microbial Plankton Community Structure and Function Responses to Vitamin B-12 and B-1 Amendments in an Upwelling System. Applied and Environmental Microbiology. 87 (22).
Status: Published
Schön, M.E., Zlatogursky, V.V., Singh, R.P., Poirier, C., Wilken, S., et al. (2021). Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae. Nature Communications. 12 (1).
Status: Published
Hagström, Å., Zweifel, U.L., Sundh, J., Osbeck, C.M.G., Bunse, C., et al. (2021). Composition and Seasonality of Membrane Transporters in Marine Picoplankton. Frontiers in Microbiology. 12.
Status: Published
Pontiller, B., Pérez Martínez, C., Bunse, C., Osbeck, C.M.G., González, J.M., et al. (2021). Taxon-Specific Shifts in Bacterial and Archaeal Transcription of Dissolved Organic Matter Cycling Genes in a Stratified Fjord. mSystems. 6 (6).
Status: Published
Joglar, V., Alvarez-Salgado, X.A., Gago-Martinez, A., Leao, J.M., Pérez Martínez, C., et al. (2021). Cobalamin and microbial plankton dynamics along a coastal to offshore transect in the Eastern North Atlantic Ocean. Environmental Microbiology. 23 (3). 1559-1583.
Status: Published
Hötzinger, M., Nilsson, E., Arabi, R., Osbeck, C.M.G., Pontiller, B., et al. (2021). Dynamics of Baltic Sea phages driven by environmental changes. Environmental Microbiology. 23 (8). 4576-4594.
Status: Published
Figueroa, D., Capo, E., Lindh, M.V., Rowe, O.F., Paczkowska, J., et al. (2021). Terrestrial dissolved organic matter inflow drives temporal dynamics of the bacterial community of a subarctic estuary (northern Baltic Sea). Environmental Microbiology. 23 (8). 4200-4213.
Status: Published
Malits, A., Boras, J.A., Balague, V., Calvo, E., Gasol, J.M., et al. (2021). Viral-Mediated Microbe Mortality Modulated by Ocean Acidification and Eutrophication : Consequences for the Carbon Fluxes Through the Microbial Food Web. Frontiers in Microbiology. 12.
Status: Published
Pontiller, B., Martinez-Garcia, S., Lundin, D., Pinhassi, J. (2020). Labile Dissolved Organic Matter Compound Characteristics Select for Divergence in Marine Bacterial Activity and Transcription. Frontiers in Microbiology. 11. 1-19.
Status: Published
Alneberg, J., Bennke, C., Beier, S., Bunse, C., Quince, C., et al. (2020). Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes. Communications Biology. 3 (1). 1-10.
Status: Published
Capo, E., Bravo, A.G., Soerensen, A.L., Bertilsson, S., Pinhassi, J., et al. (2020). Deltaproteobacteria and Spirochaetes-Like Bacteria Are Abundant Putative Mercury Methylators in Oxygen-Deficient Water and Marine Particles in the Baltic Sea. Frontiers in Microbiology. 11. 1-11.
Status: Published
Zhang, H., Yoshizawa, S., Sun, Y., Huang, Y., Chu, X., et al. (2019). Repeated evolutionary transitions of flavobacteria from marine to non-marine habitats. Environmental Microbiology. 21 (2). 648-666.
Status: Published
Karlsson, C.M.G., Cerro-Galvez, E., Lundin, D., Karlsson, C., Vila-Costa, M., et al. (2019). Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. BAL341. Microbial Biotechnology. 12 (5). 892-906.
Status: Published
Broman, E., Asmala, E., Carstensen, J., Pinhassi, J., Dopson, M. (2019). Distinct Coastal Microbiome Populations Associated With Autochthonous- and Allochthonous-Like Dissolved Organic Matter. Frontiers in Microbiology. 10. 1-15.
Status: Published
Bunse, C., Israelsson, S., Baltar, F., Bertos-Fortis, M., Fridolfsson, E., et al. (2019). High Frequency Multi-Year Variability in Baltic Sea Microbial Plankton Stocks and Activities. Frontiers in Microbiology. 9.
Status: Published
Nilsson, E., Li, K., Fridlund, J., Šulčius, S., Bunse, C., et al. (2019). Genomic and Seasonal Variations among Aquatic Phages Infecting the Baltic Sea Gammaproteobacterium Rheinheimera sp. Strain BAL341. Applied and Environmental Microbiology. 85 (18). 1-19.
Status: Published
Cerro-Galvez, E., Casal, P., Lundin, D., Pina, B., Pinhassi, J., et al. (2019). Microbial responses to anthropogenic dissolved organic carbon in the Arctic and Antarctic coastal seawaters. Environmental Microbiology. 21 (4). 1466-1481.
Status: Published
Alneberg, J., Sundh, J., Bennke, C., Beier, S., Lundin, D., et al. (2018). BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea. Scientific Data. 5.
Status: Published
Paerl, R.W., Sundh, J., Tan, D., Svenningsen, S.L., Hylander, S., et al. (2018). Prevalent reliance of bacterioplankton on exogenous vitamin B1 and precursor availability. Proceedings of the National Academy of Sciences of the United States of America. 115 (44). E10447-E10456.
Status: Published
Berner, C., Bertos-Fortis, M., Pinhassi, J., Legrand, C. (2018). Response of Microbial Communities to Changing Climate Conditions During Summer Cyanobacterial Blooms in the Baltic Sea. Frontiers in Microbiology. 9.
Status: Published
Alneberg, J., Karlsson, C.M.G., Divne, A., Bergin, C., Homa, F., et al. (2018). Genomes from uncultivated prokaryotes : a comparison of metagenome-assembled and single-amplified genomes. Microbiome. 6.
Status: Published
Broman, E., Sjöstedt, J., Pinhassi, J., Dopson, M. (2017). Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism. Microbiome. 5.
Status: Published
Bunse, C., Pinhassi, J. (2017). Marine bacterioplankton seasonal succession dynamics. Trends in Microbiology. 25 (6). 495-505.
Status: Published
Lindh, M.V., Sjöstedt, J., Ekstam, B., Casini, M., Lundin, D., et al. (2017). Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers. Environmental Microbiology. 19 (3). 1222-1236.
Status: Published
Forss, J., Lindh, M.V., Pinhassi, J., Welander, U. (2017). Microbial biotreatment of actual textile wastewater in a continuous sequential rice husk biofilter and the microbial community involved. PLOS ONE. 12 (1).
Status: Published
Broman, E., Sachpazidou, V., Pinhassi, J., Dopson, M. (2017). Oxygenation of Hypoxic Coastal Baltic Sea Sediments Impacts on Chemistry, Microbial Community Composition, and Metabolism. Frontiers in Microbiology. 8.
Status: Published
Arahal, D.R., Lucena, T., Carmen Macian, M., Ruvira, M.A., Gonzalez, J.M., et al. (2016). Marinomonas blandensis sp nova, a novel marine gammaproteobacterium. International Journal of Systematic and Evolutionary Microbiology. 66. 5544-5549.
Status: Published
Pinhassi, J., Delong, E.F., Béjà, O., González, J.M., Pedrós-Alió, C. (2016). Marine bacterial and archaeal ion-pumping rhodopsins : genetic diversity, physiology, and ecology. Microbiology and molecular biology reviews. 80 (4). 929-954.
Status: Published
Baltar, F., Legrand, C., Pinhassi, J. (2016). Cell-free extracellular enzymatic activity is linked to seasonal temperature changes : a case study in the Baltic Sea. Biogeosciences. 13 (9). 2815-2821.
Status: Published
Baltar, F., Lundin, D., Palovaara, J., Lekunberri, I., Reinthaler, T., et al. (2016). Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic. Frontiers in Microbiology. 7.
Status: Published
Brindefalk, B., Ekman, M., Ininbergs, K., Dupont, C.L., Yooseph, S., et al. (2016). Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters. Environmental Microbiology. 18 (12). 4442-4455.
Status: Published
Vaquer-Sunyer, R., Reader, H.E., Muthusamy, S.D., Lindh, M.V., Pinhassi, J., et al. (2016). Effects of wastewater treatment plant effluent inputs on planktonic metabolic rates and microbial community composition in the Baltic Sea. Biogeosciences. 13 (16). 4751-4765.
Status: Published
Sala, M.M., Aparicio, F.L., Balague, V., Boras, J.A., Borrull, E., et al. (2016). Contrasting effects of ocean acidification on the microbial food web under different trophic conditions. ICES Journal of Marine Science. 73 (3). 670-679.
Status: Published
Aparicio, F.L., Nieto-Cid, M., Borrull, E., Calvo, E., Pelejero, C., et al. (2016). Eutrophication and acidification : Do they induce changes in the dissolved organic matter dynamics in the coastal Mediterranean Sea?. Science of the Total Environment. 563. 179-189.
Status: Published
Bunse, C., Lundin, D., Karlsson, C.M.G., Akram, N., Vila-Costa, M., et al. (2016). Response of marine bacterioplankton pH homeostasis gene expression to elevated CO₂. Nature Climate Change. 6 (5). 483-487.
Status: Published
Lindh, M.V., Sjöstedt, J., Casini, M., Andersson, A., Legrand, C., et al. (2016). Local Environmental Conditions Shape Generalist But Not Specialist Components of Microbial Metacommunities in the Baltic Sea. Frontiers in Microbiology. 7. 1-10.
Status: Published
Bunse, C., Bertos-Fortis, M., Sassenhagen, I., Sildever, S., Sjöqvist, C., et al. (2016). Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom. Frontiers in Microbiology. 7.
Status: Published
Bertos-Fortis, M., Farnelid, H., Lindh, M.V., Casini, M., Andersson, A., et al. (2016). Unscrambling Cyanobacteria Community Dynamics Related to Environmental Factors. Frontiers in Microbiology. 7.
Status: Published
Baltar, F., Palovaara, J., Unrein, F., Catala, P., Hornak, K., et al. (2016). Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions. The ISME Journal. 10 (3). 568-581.
Status: Published
Lindh, M.V., Lefebure, R., Degerman, R., Lundin, D., Andersson, A., et al. (2015). Consequences of increased terrestrial dissolved organic matter and temperature on bacterioplankton community composition during a Baltic Sea mesocosm experiment. Ambio. 44 (Supplement 3). S402-S412.
Status: Published
Baltar, F., Palovaara, J., Vila-Costa, M., Salazar, G., Calvo, E., et al. (2015). Response of rare, common and abundant bacterioplankton to anthropogenic perturbations in a Mediterranean coastal site. FEMS Microbiology Ecology. 91 (6).
Status: Published
Vaquer-Sunyer, R., Conley, D.J., Muthusamy, S.D., Lindh, M.V., Pinhassi, J., et al. (2015). Dissolved Organic Nitrogen Inputs from Wastewater Treatment Plant Effluents Increase Responses of Planktonic Metabolic Rates to Warming. Environmental Science and Technology. 49 (19). 11411-11420.
Status: Published
Hugerth, L.W., Larsson, J., Alneberg, J., Lindh, M.V., Legrand, C., et al. (2015). Metagenome-assembled genomes uncover a global brackish microbiome. Genome Biology. 16.
Status: Published
Lindh, M.V., Figueroa, D., Sjöstedt, J., Baltar, F., Lundin, D., et al. (2015). Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities. Frontiers in Microbiology. 6.
Status: Published
Lindh, M.V., Sjöstedt, J., Andersson, A.F., Baltar, F., Hugerth, L., et al. (2015). Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling. Environmental Microbiology. 17 (7). 2459-2476.
Status: Published
Legrand, C., Fridolfsson, E., Bertos-Fortis, M., Lindehoff, E., Larsson, P., et al. (2015). Interannual variability of phyto-bacterioplankton biomass and production in coastal and offshore waters of the Baltic Sea. Ambio. 44 (supplement 3). S427-S438.
Status: Published
Fahlgren, C., Gómez-Consarnau, L., Zabori, J., Lindh, M.V., Krejci, R., et al. (2015). Seawater mesocosm experiments in the Arctic uncover differential transfer of marine bacteria to aerosols. Environmental Microbiology Reports. 7 (3). 460-470.
Status: Published
Dupont, C.L., Larsson, J., Yooseph, S., Ininbergs, K., Goll, J., et al. (2014). Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition. PLOS ONE. 9 (2).
Status: Published
Palovaara, J., Akram, N., Baltar, F., Bunse, C., Forsberg, J., et al. (2014). Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria. Proceedings of the National Academy of Sciences of the United States of America. 111 (35). E3650-E3658.
Status: Published
Lekunberri, I., Gasol, J.M., Acinas, S.G., Gómez-Consarnau, L., Crespo, B.G., et al. (2014). The phylogenetic and ecological context of cultured and whole genome-sequenced planktonic bacteria from the coastal NW Mediterranean Sea. Systematic and Applied Microbiology. 37 (3). 216-228.
Status: Published
Muthusamy, S.D., Baltar, F., González, J.M., Pinhassi, J. (2014). Dynamics of metabolic activities and gene expression in the Roseobacter clade bacterium Phaeobacter sp. MED193 during growth with thiosulfate. Applied and Environmental Microbiology. 80 (22). 6933-6942.
Status: Published
Lindh, M.V., Riemann, L., Baltar, F., Romero-Oliva, C., Salomon, P., et al. (2013). Consequences of increased temperature and acidification on bacterioplankton community composition during a mesocosm spring bloom in the Baltic Sea. Environmental Microbiology Reports. 5 (2). 252-262.
Status: Published
Baltar, F., Reinthaler, T., Herndl, G.J., Pinhassi, J. (2013). Major Effect of Hydrogen Peroxide on Bacterioplankton Metabolism in the Northeast Atlantic. PLOS ONE. 8 (4).
Status: Published
Fernandez-Gomez, B., Richter, M., Schueler, M., Pinhassi, J., Acinas, S.G., et al. (2013). Ecology of marine Bacteroidetes : a comparative genomics approach. The ISME Journal. 7 (5). 1026-1037.
Status: Published
Forss, J., Pinhassi, J., Lindh, M.V., Welander, U. (2013). Microbial diversity in a continuous system based on rice husks for biodegradation of the azo dyes Reactive Red 2 and Reactive Black 5. Bioresource Technology. 130. 681-688.
Status: Published
Sarmento, H., Romera-Castillo, C., Lindh, M.V., Pinhassi, J., Sala, M.M., et al. (2013). Phytoplankton species-specific release of dissolved free amino acids and their selective consumption by bacteria. Limnology and Oceanography. 58 (3). 1123-1135.
Status: Published
Akram, N., Palovaara, J., Forsberg, J., Lindh, M.V., Milton, D.L., et al. (2013). Regulation of proteorhodopsin gene expression by nutrient limitation in the marine bacterium Vibrio sp AND4. Environmental Microbiology. 15 (5). 1400-1415.
Status: Published
Baltar, F., Lindh, M.V., Parparov, A., Berman, T., Pinhassi, J. (2012). Prokaryotic community structure and respiration during long-term incubations. MicrobiologyOpen. 1 (2). 214-224.
Status: Published
Gómez-Consarnau, L., Lindh, M.V., Gasol, J.M., Pinhassi, J. (2012). Structuring of bacterioplankton communities by specific dissolved organic carbon compounds. Environmental Microbiology. 14 (9). 2361-2378.
Status: Published
Hultin, K.A.H., Krejci, R., Pinhassi, J., Gómez-Consarnau, L., Mårtensson, E.M., et al. (2011). Aerosol and bacterial emissions from Baltic Seawater. Atmospheric research. 99 (1). 1-14.
Status: Published
Wang, C.L., Chen, S., Vergin, K.L., Giovannoni, S.J., Chan, S., et al. (2011). DNA phosphorothioation is widespread and quantized in bacterial genomes. Proceedings of the National Academy of Sciences of the United States of America. 108. 2963-2968.
Status: Published
González, J.M., Pinhassi, J., Fernández-Gómez, B., Coll-Lladó, M., González-Velázquez, M., et al. (2011). Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134. Applied and Environmental Microbiology. 77 (24). 8676-8686.
Status: Published
Alonso-Saez, L., Pinhassi, J., Pernthaler, J., Gasol, J.M. (2010). Leucine-to-carbon empirical conversion factor experiments: does bacterial community structure have an influence?. Environmental Microbiology. 12 (11). 2988-2997.
Status: Published
Gomila, M., Pinhassi, J., Falsen, E., Moore, E., Lalucat, J. (2010). Kinneretia asaccharophila, gen. nov., sp. nov., isolated from fresh water, a novel member of the Rubrivivax-branch of the family Comamonadaceae. International Journal of Systematic and Evolutionary Microbiology. 60. 809-814.
Status: Published
Gómez-Consarnau, L., Akram, N., Lindell, K., Pedersen, A., Neutze, R., et al. (2010). Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation. PLoS biology. 8 (4). 1-10.
Status: Published
Persson, O., Pinhassi, J., Riemann, L., Marklund, B., Rhen, M., et al. (2009). High abundance of virulence gene homologues in marine bacteria. Environmental Microbiology. 11 (6). 1348-1357.
Status: Published
Sandaa, R., Gómez-Consarnau, L., Pinhassi, J., Riemann, L., Malits, A., et al. (2009). Viral control of bacterial biodiversity – Evidence from a nutrient enriched marine mesocosm experiment. Environmental Microbiology. 11 (10). 2585-2597.
Status: Published
Pinhassi, J., Pujalte, M.J., Pascual, J., Gonzalez, J.M., Lekunberri, I., et al. (2009). Bermanella marisrubri gen. nov., sp. nov., a genome-sequenced gammaproteobacterium from the Red Sea. International Journal of Systematic and Evolutionary Microbiology. 59. 373-377.
Status: Published
Massana, R., Unrein, F., Rodriguez-Martinez, R., Forn, I., Lefort, T., et al. (2009). Grazing rates and functional diversity of uncultured heterotrophic flagellates. The ISME Journal. 3 (5). 588-596.
Status: Published
Pinhassi, J., Nedashkovskaya, O.I., Hagström, Å., Vancanneyt, M. (2009). Winogradskyella rapida, sp. nov., isolated from protein-enriched seawater. International Journal of Systematic and Evolutionary Microbiology. 59. 2180-2184.
Status: Published
Gasol, J.M., Pinhassi, J., Alonso-Saez, L., Ducklow, H., Herndl, G.J., et al. (2008). Towards a better understanding of the microbial carbon flux in the sea. Aquatic Microbial Ecology. 53. 21-38.
Status: Published
Alonso-Saez, L., Vazquez-Dominguez, E., Cardelus, C., Pinhassi, J., Sala, M.M., et al. (2008). Factors controlling the year-round variability in carbon flux through bacteria in a coastal marine system. Ecosystems (New York. Print). 11 (3). 397-409.
Status: Published
Gourdon, P., Alfredsson, A., Pedersen, A., Malmerberg, E., Nyblom, M., et al. (2008). Optimized in vitro and in vivo expression of proteorhodopsin: a seven-transmembrane proton pump. Protein Expression and Purification. 58. 103-113.
Status: Published
Gonzalez, J.M., Fernandez-Gomez, B., Fernandez-Guerra, A., Gomez-Consarnau, L., Sanchez, O., et al. (2008). Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria). Proceedings of the National Academy of Sciences of the United States of America. 105 (25). 8724-8729.
Status: Published
Sjölund, M., Bonnedahl, J., Hernandez, J., Bengtsson, S., Cederbrandt, G., et al. (2008). Dissemination of multidrug-resistant bacteria into the Arctic. Emerging Infectious Diseases. 14. 70-72.
Status: Published
Wahlgren, J., Waldenström, J., Sahlin, S., Haemig, P., Fouchier, R., et al. (2008). Gene segment reassortment between American and Eurasian lineages of avian influenza virus from waterfowl in the Beringia Area. Vector Borne and Zoonotic Diseases. 8 (6). 783-790.
Status: Published
Arahal, D., Lekunberri, I., Gonzalez, J., Pascual, J., Pujalte, M., et al. (2007). Neptuniibacter caesariensis gen. nov., sp. nov., a novel marine genome-sequenced gammaproteobacterium. International Journal of Systematic and Evolutionary Microbiology. 57. 1000-1006.
Status: Published
Pinhassi, J., Pujalte, M., Macian, M., Lekunberri, I., Gonzalez, J., et al. (2007). Reinekea blandensis sp. nov., a marine, genome-sequenced gammaproteobacterium. International Journal of Systematic and Evolutionary Microbiology. 57. 2370-2375.
Status: Published
Vila-Costa, M., Pinhassi, J., Alonso, C., Pernthaler, J., Simo, R. (2007). Seasonal variation of DMSP-assimilating bacteria in the coastal NW Mediterranean. Environmental Microbiology. 9. 2451-2463.
Status: Published
Alonso-Saez, L., Aristegui, J., Pinhassi, J., Gomez-Consarnau, L., Gonzalez, J., et al. (2007). Bacterial assemblage structure and carbon metabolism along a productivity gradient in the NE Atlantic Ocean. Aquatic Microbial Ecology. 46. 43-53.
Status: Published
Gomez-Consarnau, L., Gonzalez, J.M., Coll-Llado, M., Gourdon, P., Pascher, T., et al. (2007). Light stimulates growth of proteorhodopsin-containing marine Flavobacteria. Nature. 445. 210-213.
Status: Published
Alonso-Saez, L., Balagué, V., Sanchez, E., Gonzalez, J., Pinhassi, J., et al. (2007). Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH. FEMS Microbiology Ecology. 60. 98-112.
Status: Published
Allers, E., Gomez-Consarnau, L., Pinhassi, J., Simek, K., Gasol, J., et al. (2007). Population dynamics of Alteromonas and Roseobacter in marine mesocosms after substrate and nutrient manipulations. Environmental Microbiology. 9. 2417-2429.
Status: Published
Pinhassi, J., Bowman, J.P., Nedashkovskaya, O.I., Lekunberri, I., Gomez-Consarnau, L., et al. (2006). Leeuwenhoekiella blandensis sp nov., a genome-sequenced marine member of the family Flavobacteriaceae. International journal of systematic and evolutionary microbiology. 56. 1489-1493.
Status: Published
Pinhassi, J., Gomez-Consarnau, L., Alonso-Saez, L., Sala, M., Vidal, M., et al. (2006). Seasonal changes in bacterioplankton nutrient limitation and their effects on bacterial community composition in the NW Mediterranean Sea. Aquatic microbial ecology. 44 (3). 241-252.
Status: Published
Sala, M., Pinhassi, J., Gasol, J. (2006). Estimation of bacterial use of dissolved organic nitrogen compounds in aquatic ecosystems using Biolog plates. Aquatic microbial ecology. 42 (1). 1-5.
Status: Published
Pommier, T., Pinhassi, J., Hagström, Å. (2005). Biogeograpic analysis of ribosomal RNA clusters from marine bacterioplankton. Aquatic Microbial Ecology. 41. 79-89.
Status: Published
Pinhassi, J., Simo, R., Gonzalez, J.M., Vila, M., Alonso-Saez, L., et al. (2005). Dimethylsulfoniopropionate turnover is linked to the composition and dynamics of the bacterioplankton assemblage during a microcosm phytoplankton bloom. Applied and environmental microbiology. 71 (12). 7650-7660.
Status: Published
Vila, M., Simo, R., Kiene, R.P., Pinhassi, J., Gonzalez, J.M., et al. (2004). Use of microautoradiography combined with fluorescence in situ hybridization to determine dimethylsulfoniopropionate incorporation by marine bacterioplankton taxa. Applied and Environmental Microbiology. 70(8). 4648-4657.
Status: Published
Pinhassi, J., Sala, M., Havskum, H., Peters, F., Guadayol, O., et al. (2004). Changes in bacterioplankton composition under different phytoplankton regimens. Applied and Environmental Microbiology. 70. 6753-6766.
Status: Published
Pinhassi, J., Winding, A., Binnerup, S., Zweifel, U.L., Riemann, B., et al. (2003). Spatial variability in bacterioplankton community composition at the Skagerrak-Kattegat front.. Marine Ecology Progress Series. 255. 1-13.
Status: Published
Pinhassi, J., Berman, T. (2003). Differential growth response of colony-forming alpha- and gamma-Proteobacteria in dilution culture and nutrient addition experiments from Lake Kinneret (Israel), the eastern Mediterranean Sea and the Gulf of Eilat. Applied and Environmental Microbiology. 69(1). 199-211.
Status: Published
Johansen, J., Blackburn, N., Pinhassi, J., Zweifel, U.L., Hagström, Å. (2002). Large Variability in Motility Characteristics among Marine Bacteria.. Aquatic Microbial Ecology. 28. 229-237.
Status: Published
Hagström, Å., Pinhassi, J., Zweifel, U.L. (2001). Marine bacterioplankton show bursts of rapid growth induced by substrate shifts. Aquatic Microbial Ecology. 24. 109-115.
Status: Published
Middelboe, M., Hagström, Å., Blackburn, N., Sinn, B., Borch, N., et al. (2001). Effects of bacteriophages on the population dynamics of four strains of pelagic marine bacteria.. Microbial Ecology. 42. 395-406.
Status: Published
Hagström, Å., Pinhassi, J., Zweifel, U.L. (2000). Biogeographical diversity among marine bacterioplankton. Aquatic Microbial Ecology. 21. 231-244.
Status: Published
Pinhassi, J., Hagström, Å. (2000). Seasonal succesion in marine bacterioplankton.. Aquatic Microbial Ecology. 21. 245-256.
Status: Published
Pinhassi, J., Azam, F., Hemphälä, J., Long, R., Martinez, J., et al. (1999). Coupling between bacterioplankton species compostion, population dynamics, and organic matter degradation.. Aquatic Microbial Ecology. 17.
Status: Published
Gasol, J., Doval, M.D., Pinhassi, J., Calderon-Paz, J.I., Guixa-Boixareu, N., et al. (1998). Diel variations in bacterial heterotrophic activity and growth in the northwestern Mediterranean. Marine Ecology Progress Series. 164. 107-124.
Status: Published
Pinhassi, J., Zweifel, U.L., Hagström, Å. (1997). Dominant Marine Bacterioplankton Species Found Among Colony Forming Bacteria.. Applied and Environmental Microbiology. 63. 3359-3366.
Status: Published

Article in journal (Other (popular science, discussion, etc.))

Pinhassi, J., Gasol, J.M. (2013). In Memoriam Tom Berman. Aquatic Microbial Ecology. 70 (3). 187-187.
Status: Published

Article, review/survey (Refereed)

Lindh, M.V., Pinhassi, J. (2018). Sensitivity of Bacterioplankton to Environmental Disturbance : A Review of Baltic Sea Field Studies and Experiments. Frontiers in Marine Science. Frontiers Media S.A.. 5. 1-17.
Status: Published
Muthusamy, S.D., Lundin, D., Branca, R.M.M., Baltar, F., Gonzalez, J.M., et al. (2017). Comparative proteomics reveals signature metabolisms of exponentially growing and stationary phase marine bacteria. Environmental Microbiology. Wiley-Blackwell. 19 (6). 2301-2319.
Status: Published

Chapter in book (Refereed)

Beja, O., Pinhassi, J., Spudich, J.L. (2013). Proteorhodopsins: widespread microbial light-driven proton pumps. Encyclopedia of Biodiversity. Waltham, MA, Academic Press. 280-285.

Chapter in book (Other academic)

Martínez-García, S., Pinhassi, J. (2019). Adaptations of microorganisms to low nutrient environments : managing life in the oligotrophic ocean. Encyclopedia of microbiology. Elsevier. 9-21.

Manuscript (preprint) (Other academic)

Karlsson, C.M.G., Pontiller, B., Teikari, J.E., Traving, S.J., Happel, E.M., et al. Metatranscriptomic analysis uncovers divergent responses of Baltic Sea bacteria to forest and agriculture river loadings.
Osbeck, C.M.G., Pontiller, B., Teikari, J.E., Traving, S.J., Happel, E.M., et al. Divergent transcriptional responses of Baltic Sea bacteria to forest and agriculture river loadings.
Karlsson, C.M.G., Lundin, D., Karlsson, C., Teikari, J.E., Moran, M.A., et al. Different gene expression responses in two Baltic Sea heterotrophic model bacteria to dinoflagellate dissolved organic matter.
Bunse, C., Lundin, D., Lindh, M.V., Sjöstedt, J., Israelsson, S., et al. Seasonality and co-occurrences of free-living Baltic Sea bacterioplankton.
Israelsson, S., Bunse, C., Baltar, F., Bertos-Fortis, M., Fridolfsson, E., et al. Seasonal dynamics of Baltic Sea plankton activities: heterotrophic bacterial function under different biological and environmental conditions.