My ongoing research projects
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Project: Baltic Sea bays exposed to 50 years of warming can inform how biodiversity and ecosystem functioning respond to climate change While there is little doubt that climate change is occurring,…
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Project: Consequences of climate change in a Baltic Sea bay exposed to 50 years of warming Today, there is little knowledge of the consequences of global warming on Baltic Sea ecosystems and aquatic…
Publications
Article in journal (Refereed)
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Li, S., Nilsson, E., Seidel, L., Ketzer, J.M., Forsman, A., et al. (2024). Baltic Sea coastal sediment-bound eukaryotes have increased year-round activities under predicted climate change related warming. Frontiers in Microbiology. 15.
Status: Published -
Dopson, M., Rezaei Somee, M., Gonzalez-Rosales, C., Lui, L.M., Turner, S., et al. (2024). Novel candidate taxa contribute to key metabolic processes in Fennoscandian Shield deep groundwaters. ISME Communications. 4 (1).
Status: Published -
Rahlff, J., Wietz, M., Giebel, H., Bayfield, O., Nilsson, E., et al. (2023). Ecogenomics and cultivation reveal distinctive viral-bacterial communities in the surface microlayer of a Baltic Sea slick. ISME Communications. 3 (1).
Status: Published -
Cui, L., Balamkundu, S., Liu, C., Ye, H., Hourihan, J., et al. (2023). Four additional natural 7-deazaguanine derivatives in phages and how to make them. Nucleic Acids Research. 51 (17). 9214-9226.
Status: Published -
Seidel, L., Broman, E., Nilsson, E., Ståhle, M., Ketzer, J.M., et al. (2023). Climate change-related warming reduces thermal sensitivity and modifies metabolic activity of coastal benthic bacterial communities. The ISME Journal. 17. 855-869.
Status: Published -
Seidel, L., Broman, E., Ståhle, M., Nilsson, E., Turner, S., et al. (2022). Long-term warming of Baltic Sea coastal waters affects bacterial communities in bottom water and sediments differently. Frontiers in Microbiology. 13.
Status: Published -
Svensson, P.A., Eghbal, R., Eriksson, R., Nilsson, E. (2022). How cunning is the puppet-master? Cestode-infected fish appear generally fearless. Parasitology Research. 121. 1305-1315.
Status: Published -
Nilsson, E., Li, K., Hoetzinger, M., Holmfeldt, K. (2022). Nutrient driven transcriptional changes during phage infection in an aquatic Gammaproteobacterium. Environmental Microbiology. 24 (5). 2270-2281.
Status: Published -
Drobysheva, A.V., Panafidina, S.A., Kolesnik, M.V., Klimuk, E.I., Minakhin, L., et al. (2021). Structure and function of virion RNA polymerase of a crAss-like phage. Nature. 589 (7841). 306-309.
Status: Published -
Holmfeldt, K., Nilsson, E., Simone, D., Lopez-Fernandez, M., Wu, X., et al. (2021). The Fennoscandian Shield deep terrestrial virosphere suggests slow motion 'boom and burst' cycles. Communications Biology. 4 (1).
Status: Published -
Hötzinger, M., Nilsson, E., Arabi, R., Osbeck, C.M.G., Pontiller, B., et al. (2021). Dynamics of Baltic Sea phages driven by environmental changes. Environmental Microbiology. 23 (8). 4576-4594.
Status: Published -
Nilsson, E., Bayfield, O.W., Lundin, D., Antson, A.A., Holmfeldt, K. (2020). Diversity and host interactions among virulent and temperate Baltic Sea Flavobacterium phages. Viruses. 12 (2). 1-21.
Status: Published -
Sulcius, S., Simoliunas, E., Alzbutas, G., Gasiunas, G., Jauniskis, V., et al. (2019). Genomic Characterization of Cyanophage vB_AphaS-CL131 Infecting Filamentous Diazotrophic Cyanobacterium Aphanizomenon flos-aquae Reveals Novel Insights into Virus-Bacterium Interactions. Applied and Environmental Microbiology. 85 (1).
Status: Published -
Nilsson, E., Li, K., Fridlund, J., Šulčius, S., Bunse, C., et al. (2019). Genomic and Seasonal Variations among Aquatic Phages Infecting the Baltic Sea Gammaproteobacterium Rheinheimera sp. Strain BAL341. Applied and Environmental Microbiology. 85 (18). 1-19.
Status: Published -
Lopez-Fernandez, M., Simone, D., Wu, X., Soler, L., Nilsson, E., et al. (2018). Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere. mBio. 9 (6).
Status: Published
Doctoral thesis, comprehensive summary (Other academic)
- Nilsson, E. (2020). Diversity of aquatic viruses from genes to host interactions. Doctoral Thesis. Växjö, Linnaeus University Press. 49.
Manuscript (preprint) (Other academic)
- Nilsson, E., Li, K., Holmfeldt, K. Nutrient driven transcriptional changes during phage infection in aquatic bacteria.
- Karlsson, C.M.G., Pontiller, B., Teikari, J.E., Traving, S.J., Happel, E.M., et al. Metatranscriptomic analysis uncovers divergent responses of Baltic Sea bacteria to forest and agriculture river loadings.
- Osbeck, C.M.G., Pontiller, B., Teikari, J.E., Traving, S.J., Happel, E.M., et al. Divergent transcriptional responses of Baltic Sea bacteria to forest and agriculture river loadings.
- Rahlff, J., Wietz, M., Giebel, H., Bayfield, O., Nilsson, E., et al. Ecogenomics reveals distinctive viral-bacterial communities in the surface microlayer of a natural surface slick.
- Holmfeldt, K., Nilsson, E., Simone, D., Lopez-Fernandez, M., Wu, X., et al. The deep terrestrial virosphere.